Yes, the intern will not follow the procedure, and likely isn't even technically required to do so. But, before the application becomes a tool actually used inside the company, there should be some quality control done.
Think of the management structure which arranges, and is satisfied with, tedious, repetitive, manual paper-pushing processes - such that an INTERN can immediately see the efficiency benefits that would come with automation, and doesn't just suggest doing so, but actually builds a program (in limited intern timeframe), that is so helpful it's quickly picked up by multiple employees.
Then think again of those managers getting paid manager salaries who couldn't figure this out themselves - or worse, the ones who want to shut it all down because he didn't "follow the procedure" (the procedure of not doing anything useful???)
Shutting it down due to a technicality about not following a procedure != shutting it down because it is an unmaintainable mess, while also tasking IT with implementing the same core idea, but in a proper way.